Selected Publications Guido Gerig 1998 - today

A searchable database of publications of the UNC MIDAG group (till August 2002) and other relevant research papers is found at MIDAG-BIBLIO. An unformattted, temporary but updated database of publications of the UNC MIDAG group is found at MIDAG-BIBLIO-TEMP.

PubMed Search: PubMed

A full list of older publications (before 1998) for electronic transfer can be found in the homepage of my former institution "Image Science Lab, EE Department, Swiss Federal Institute of Technology ETH Zurich, Switzerland": BIWI . Please press the button "Publications" and select dates (optional) and author to get the abstract, bibliography and a gzipped PS-file for ftp transfer.
 

ADS Site Map at Harvard ADS.

Submitted

  • Simulation of Brain Tumors in MR Images for Evaluation of Segmentation Efficacy, Marcel Prastawa, Elizabeth Bullitt, and Guido Gerig, submitted IEEE TMI, May 2006

    • 2007 Peer reviewed journal papers

  • John H. Gilmore, Weili Lin, Isabella Corouge, Y. Sampath K. Vetsa, J. Keith Smith, Chaeryon Kang, Hongbin Gu, Robert M. Hamer, Jeffrey A. Lieberman, Guido Gerig, Early Postnatal Development of Corpus Callosum and Corticospinal White Matter Assessed with Quantitative Tractography, accepted AJNR-07-00044 (American Journal of Neuroradiology), in print
  • Matthew K Belmonte; John C Mazziotta; Nancy J Minshew; Alan C Evans; Eric Courchesne; Stephen R Dager; Susan Y Bookheimer; Elizabeth H Aylward; David G Amaral; Rita M Cantor; Diane C Chugani; Anders M Dale; Christos Davatzikos; Guido Gerig; Martha R Herbert; Janet E Lainhart; Declan G Murphy; Joseph Piven; Allan L Reiss; Robert T Schultz; Thomas A Zeffiro; Susan Levi-Pearl; Clara Lajonchere; Sophia A Colamarino, "Offering to Share: How to Put Heads Together in Autism Neuroimaging", (Journal of Autism and Developmental Disorders JADD), in print
  • Taylor WD, MacFall JR, Gerig G, Krishnan KR. Structural integrity of the uncinate fasciculus in geriatric depression: Relationship with age of onset. In press, Neuropsychiatric Disease and Treatment.
  • Gilmore JH, Lin W, Prastawa MW, Looney CB, Vetsa YSK, Knickmeyer RC, Evans DD, Smith JK, Hamer RM, Lieberman JA, Gerig G. Regional gray matter growth, sexual dimorphism, and cerebral asymmetry in the neonatal brain. Journal of Neuroscience 2007;27(6):1255-1260. Acrobat Reader format [1106kb]
    Original Artible Journal of Neuroscience
    Special Feature J Neuroscience
    Medical News Today
    UNC News Feb 7, 2007
    UNC School of Public Health

    • 2007 Peer reviewed full length conference papers

  • Goodlett, Casey , Fletcher, P. Thomas , Lin, Weili , and Gerig, Guido, "Quantification of measurement error in DTI: Theoretical predictions and validation", in print MICCAI 2007, to appear Nov. 2007
  • Fan Fan Zhang, Casey Goodlett, Edwin Hancock, Guido Gerig, "Probabilistic White Matter Fiber Tracking using Particle Filtering", accepted CVPR workshop EMMCVPR 2007
  • Fan Zhang et al., Probabilistic White Matter Fiber Tracking using Particle Filtering, accepted MICCAI 2007, to appear
  • Terriberry, Timothy B., Damon, James N., Pizer, Stephen M., Joshi, Sarang C. and Gerig, Guido, "Population-based Fitting of Medial Shape Models with Correspondence Optimization", in print Proceedings IPMI'07, Lecture Notes in Computer Science, Springer Verlag, to appear July 2007
  • Kevin Gorczowski, Martin Styner, Ja Yeon Jeong, J. S. Marron, Joseph Piven, Heather Cody Hazlett, Stephen M. Pizer, Guido Gerig, Statistical Shape Analysis of Multi-Object Complexes, accepted CVPR 2007
  • C. B. Goodlett, P. T. Fletcher, W. Lin, and G. Gerig, Noise-induced bias in low-direction diffusion tensor MRI: Replication of Monte-Carlo simulation with in-vivo scans, short paper accepted ISMRM 2007
  • D Nain, M Styner, M Niethammer, J J Levitt, M E Shenton, G Gerig, A Bobick, A Tannenbaum, Statistical shape analysis of brain structures using spherical wavelets, to appear ISBI 2007, IEEE press
  • Martin Styner, Shun Xu, Mohammed El-Sayed, Guido Gerig, Correspondence Evaluation in local shape analysis and structural subdivision, to appear ISBI 2007, IEEE press
  • Kevin Gorczowski, Martin Stynera, Ja Yeon Jeonga, J. S. Marron, Joseph Piven, Heather Cody, Hazlett, Stephen M. Pizer, Guido Gerig, Discrimination Analysis using Multi-object Statistics of Shape and Pose, accepted SPIE conference, January 2007
  • Sylvain Gouttard, Martin Styner, Sarang Joshi, Rachel G. Smith, Heather Cody, Guido Gerig, Subcortical structure segmentation using probabilistic atlas prior, accepted SPIE conference, January 2007
  • M. Styner, I. Oguz, S. Xu, D. Pantazis, and G. Gerig. Statistical group differences in anatomical shape analysis using hotelling T2 metric. Proc SPIE Medical Imaging Conference, in print, 2007.

    • 2006 Peer reviewed journal papers

  • John H. Gilmore, Weili Lin, and Guido Gerig, IMAGES IN NEUROSCIENCE: Fetal and Neonatal Brain Development, Am J Psychiatry, Dec 2006; 163: 2046. Acrobat Reader format [132kb]
  • Carissa J. Cascio, Martin Styner, Rachel G. Smith, Michele D. Poe, Guido Gerig, Heather C. Hazlett, Matthieu Jomier, Roland Bammer, and Joseph Piven, Tractography-based segmentation of the corpus callosum reveals a reduced relationship to cortical white matter volume in young children with developmental delay, Am J Psychiatry, Dec 2006; 163: 2157 - 2163 Acrobat Reader format [199Kb]
  • Diffusion Tensor Imaging: Application to the Study of the Developing Brain, Carissa J. Cascio, Guido Gerig and Joseph Piven, in print Journal of the American Academy of Child and Adolescent Psychiatry JAACAP, August 2006 Acrobat Reader format [970kb]
  • Fiber Tract-Oriented Statistics for Quantitative Diffusion Tensor MRI Analysis, Isabelle Corouge, P.Thomas Fletcher, Sarang Joshi, Sylvain Gouttard, Guido Gerig, Medical Image Analysis 10 (2006), 786 - 798 Acrobat Reader format [914kb]
    PubMed Entry
  • Yushkevich, PA, Piven, J., Cody Hazlett, H., Gimpel Smith, R., Ho, S, Gee, J.J.Gerig, G.; User-Guided 3D Active Contour Segmentation of Anatomical Structures: Significantly Improved Efficiency and Reliability, NeuroImage 31 (2006) 1116 - 1128 Acrobat Reader format [983Kb]
    PubMed Entry
    Link to Elsevier Direct
  • Heather Cody Hazlett, Michele D. Poe, Guido Gerig, Rachel Gimpel Smith and Joseph Piven, Cortical Gray and White Brain Tissue Volume in Adolescents and Adults with Autism, Biological Psychiatry, Volume 59, Issue 1, Pages 1-96 (1 January 2006) Acrobat Reader format [1.5Mb]
    PubMed Entry
  • Peter Lorenzen, Marcel Prastawa, Brad Davis, Guido Gerig, Elizabeth Bullitt, and Sarang Joshi, Multi-Modal Image Set Registration and Atlas Formation, Medical Image Analysis MEDIA, Elsevier, Vol 10 issue 3, pp 440-451, May 2006 Acrobat Reader format [600Kb]
    PubMed Entry

    • 2006 Peer reviewed full length conference papers

  • Oguz, Ipek, Gerig, Guido, Barre, Sebastien, Styner, Martin, A Quantitative KWMeshVisu: A Mesh Visualization Tool for Shape Analysis, 2006, ISC/NA-MIC Workshop on Open Science at MICCAI 2006, Online publication: http://hdl.handle.net/1926/220
  • Styner, M. and Oguz, I. and Xu, S. and Brechbuhler, C. and Pantazis, D. and Levitt, J. and Shenton, M. and Gerig, G.:Framework for the Statistical Shape Analysis of Brain Structures using SPHARM-PDM, Open Science Workshop at MICCAI 2006, Kopenhagen, published at Insight Journal DSpace link: http://hdl.handle.net/1926/215
  • Martin Styner, Kevin Gorczowski, Tom Fletcher, Ja Yeon Jeong, Stephen M. Pizer, Guido Gerig, Multi-Object Statistics using Principal Geodesic Analysis in a Longitudinal Pediatric Study, Lecture Notes in Computer Science LNCS No. 4091, G-Z Yang, T. Jiang, D. Shen, L. Gu and J. Yang, editors, Springer Verlag, Proc. MIAR conference, pp. 1 - 8, August 2006 Acrobat Reader format [807Kb]
  • Timothy B. Terriberry and Guido Gerig, A Continuous 3-D Medial Shape Model With Branching, International Workshop on Mathematical Foundations of Computational Anatomy MFCA-2006, in conjunction with MICCAI 2006 MFCA-2006
    Acrobat Reader format [807Kb]
  • Improved Correspondence for DTI Population Studies via Unbiased Atlas Building Casey Goodlett, Brad Davis, Remi Jean, John Gilmore, and Guido Gerig, Lecture Notes in Computer Science LNCS, Medical Image Computing and Computer-Assisted Intervention, Springer Verlag, Vol. 4191, Oct. 2006, pp. 260 - 267 Acrobat Reader format [1.17Mb]
  • Computational Anatomy to Assess Longitudinal Trajectory of Brain Growth, G. Gerig, B. Davis, P. Lorenzen, Sh. Xu, M. Jomier, J. Piven and S. Joshi, to appear Proc. 3DPVT, June 2006 Acrobat Reader format [1.78Mb]
  • Shun Xu, Martin Styner, Brad Davis, Sarang Joshi, Guido Gerig, Group Mean Differences of Voxel and Surface Objects via Nonlinear Averaging, in IEEE International Symposium on Biomedical Imaging (ISBI), pp. 758-761, Apr. 2006 Acrobat Reader format [416Kb]
  • Guido Gerig, Sarang Joshi, Tom Fletcher, Kevin Gorczowski, Shun Xu, Stephen M. Pizer, Martin Styner, "Statistics of populations of images and its embedded objects: Driving applications in neuroimaging", in IEEE International Symposium on Biomedical Imaging (ISBI), special session Shape in Imaging, pp. 1120-1123, Apr. 2006 Acrobat Reader format [1.19Mb]
  • Martin Styner, Matthieu Jomier, and Guido Gerig, Closed and open source neuroimage analysis tools and libraries at UNC, in IEEE International Symposium on Biomedical Imaging (ISBI), special session Open Source, pp. 702-705, Apr. 2006. Acrobat Reader format [188Kb]

    • 2005 Peer reviewed journal papers

  • Matthew J. Hoptman, Jan Volavka, Elisabeth M. Weiss, Pál Czobor, Philip R. Szeszko, Guido Gerig, Miranda Chakos, Joseph Blocher, Leslie L. Citrome , Jean-Pierre Lindenmayer, Brian Sheitman, Jeffrey A. Lieberman and Robert M. Bilder, Quantitative MRI Measures of Orbitofrontal Cortex in Patients with Chronic Schizophrenia or Schizoaffective Disorder in print Psychiatry Research, Neuroimaging
  • Amy Pinkham, David Penn, Bethany Wangelin, Diana Perkins, Guido Gerig, Hongbin Gu, and Jeffrey Lieberman, Facial Emotion Perception and Fusiform Gyrus Volume in First Episode Schizophrenia, Schizophrenia Research, in print
  • Marcel Prastawa, John H. Gilmore, Weili Lin, Guido Gerig, Automatic Segmentation of MR Images of the Developing Newborn Brain, Medical Image Analysis (MedIA). Vol 9, October 2005, pages 457-466 Acrobat Reader format [800Kb]
    Link to Elsevier Direct
  • Hazlett, Heather Cody, Poe, Michele, Gerig, Guido, Smith, Rachel, Provenzale, Jim, Ross, Allison, Gilmore, John H. and Piven, Joseph, Magnetic Resonance Imaging and Head Circumference Study of Brain Size in Autism, Birth Through Age 2 Years, Arch Gen Psychiatry. 2005;62:1366-1376 Acrobat Reader format [800Kb]
  • Elizabeth Bullitt, Donglin Zeng, Guido Gerig, Stephen Aylward, Sarang Joshi, J. Keith Smith, Weili Lin, Matthew G. Ewend, Vessel Tortuosity and Brain Tumor Malignancy: A Blinded Study, Academic Radiology, 12:1232-1240, 2005 Abstract/Full Text
  • Martin Styner, Jeffrey A. Lieberman, Robert McClure, Daniel Weinberger, Douglas Jones, Guido Gerig, Morphometric analysis of lateral ventricles in schizophrenia and healthy controls regarding genetic and disease-specific factors (in print Proc. National Academy of Science PNAS, Feb. 2005) Acrobat Reader format [611Kb] // PNAS Abstract
    • News reports about this paper: Lichtblicke (German) Bild der Wissenschaft (German)

    2005 Peer reviewed full length conference papers

  • Yushkevich Paul A., Piven Joseph, Cody Heather, Ho Sean, Gee James C., Gerig Guido, User-Guided Level Set Segmentation of Anatomical Structures with ITK-SNAP, The Insight Journal, vol. ISC/NAMIC/ MICCAI Workshop on Open-Source Software, 2005, Online publication: Download
  • C. Goodlett, I. Corouge, M. Jomier, and G. Gerig, A Quantitative DTI Fiber Tract Analysis Suite, The Insight Journal, vol. ISC/NAMIC/ MICCAI Workshop on Open-Source Software, 2005, Online publication: Download
  • Corouge, I., Fletcher, T., Joshi, S., Gilmore J.H., and Gerig, G., Fiber Tract-Oriented Statistics for Quantitative Diffusion Tensor MRI Analysis, Lecture Notes in Computer Science LNCS, James S. Duncan and Guido Gerig, editors, Springer Verlag, Vol. 3749, Oct. 2005, pp. 131 -- 138 Acrobat Reader format
  • Prastawa, M., Bullitt, E. and Gerig, G., Synthetic Ground Truth for Validation of Brain Tumor MRI Segmentation, Lecture Notes in Computer Science LNCS, James S. Duncan and Guido Gerig, editors, Springer Verlag, Vol. 3749, Oct. 2005, pp. 26 -- 33 Acrobat Reader format
  • Mortamet, B., Donglin, Z., Gerig, G., Prastawa, M. and Bullitt, E., Effects of healthy aging measured by intracranial compartment volumes using designed MR brain database, Lecture Notes in Computer Science LNCS, James S. Duncan and Guido Gerig, editors, Springer Verlag, Vol. 3749, Oct. 2005, pp. 383 -- 391 Acrobat Reader format
  • Terriberry, T., Joshi S., and Gerig, G., Hypothesis Testing with Nonlinear Shape Models, Lecture Notes in Computer Science LNCS, Gary E. Christensen and Milan Sonka, editors, Springer Verlag, Vol. 3565, July. 2005, pp. 15 -- 26 Acrobat Reader format

    • 2004 Peer reviewed journal papers

  • Elizabeth Bullitt, Matthew G. Ewend, Stephen Aylward, Weili Lin, Guido Gerig, Sarang Joshi, Inkyung Jung, Keith Muller, Keith Smith, Abnormal vessel tortuosity as a marker of treatment response of malignant gliomas: Preliminary report Technology in Cancer Research and Treatment TCRT, Volume 3 No. 6 (p 525-670) Dec 2004
  • MH Chakos, SA Schobel, H Gu, G Gerig, D Bradford, C Charles, and J Lieberman, "Duration of illness and treatment effects on hippocampal volume in male patients with schizophrenia," British Journal of Psychiatry, vol. 186, no. , pp. 26-31, 2005. Acrobat Reader format [168Kb]
  • Sarang Joshi, Brad Davis, Matthieu Jomier, and Guido Gerig, "Unbiased Diffeomorphic Atlas Construction for Computational Anatomy," NeuroImage; Supplement issue on Mathematics in Brain Imaging, (PM Thompson, MI Miller, T Ratnanather, RA Poldrack, and TE Nichols, eds.), vol. 23, no. Supplement1, pp. S151-S160, Elsevier, Inc, 2004. Acrobat Reader format [800Kb]
  • John H. Gilmore, Guihua Zhai, Kathy Wilber, J. Keith Smith, Weili Lin, and Guido Gerig, "3 Tesla magnetic resonance imaging of the brain in newborns," Psychiatric Research Neuroimaging, vol. 132, no. , pp. 81-85, Elsevier, 2004. Acrobat Reader format [190Kb]
  • Martin Styner, Jeffrey A. Lieberman, Dimitrios Pantazis and Guido Gerig, "Boundary and Medial Shape Analysis of the Hippocampus in Schizophrenia", Medical Image Analysis MEDIA, Elsevier, Edited by R. Ellis and T. Peters, Vol. 8, Issue 3, Sept. 2004, pages 197-203 Acrobat Reader format [840Kb]
  • Marcel Prastawa, Elizabeth Bullitt, Sean Ho, Guido Gerig, "A Brain Tumor Segmentation Framework Based On Outlier Detection", Medical Image Analysis MEDIA, Elsevier, Edited by R. Ellis and T. Peters, Vol. 8, Issue 3, Sept. 2004, pages 275-283 Acrobat Reader format [840Kb]
  • Cevidanes, L.H.S., Franco, A.A., Gerig, G., Proffit, W.R., Slice, D.E., Enlow, D.H., et al (2005). Comparison of relative mandibular growth vectors with high-resolution 3-dimensional imaging.Am J Orthod Dentofacial Orthop, 128:27-34.
  • Cevidanes, L.H.S., Franco, A.A., Gerig, G., Proffit, W.R., Slice, D.E., Enlow, D.H., et al (2005). Assessment of mandibular growth and response to orthopedic therapy with 3-dimensional magnetic resonance images. Am J Orthod Dentofacial Orthop, 128:16-26.

    • 2004 Peer reviewed full length conference papers

  • Guido Gerig, Sylvain Gouttard, and Isabelle Corouge, "Analysis of Brain White Matter via Fiber Tract Modeling", IEEE Engineering in Medicine and Biology EMB 2004: Abstract p. 426, full paper IEEE Catalog No: 04CH37558C, ISBN: 0-7803-8440-7 Acrobat Reader format [4.2Mb]
  • Isabelle Corouge, Sylvain Gouttard, and Guido Gerig, "A Statistical Shape Model of Individual Fiber Tracts Extracted from Diffusion Tensor MRI", Lecture Notes in Computer Science LNCS 3217, Springer Verlag, pp. 671-679, 2004 Acrobat Reader format [2.7Mb]
  • Marcel Prastawa, John Gilmore, Weili Lin, and Guido Gerig, "Automatic Segmentation of Neonatal Brain MRI", Lecture Notes in Computer Science LNCS 3216, Springer Verlag, pp. 10-17, 2004 Acrobat Reader format [300Kb]
  • Sean Ho, Guido Gerig, "Profile Scale-spaces for Multiscale Image Match", Lecture Notes in Computer Science LNCS 3216, Springer Verlag, pp. 176-183, 2004 Acrobat Reader format [310Kb]
  • Peter Lorenzen, Brad Davis, Guido Gerig, Elizabeth Bullitt and Sarang Joshi, "Multi-class Posterior Atlas Formation via Unbiased Kullback-Leibler Template Estimation", Lecture Notes in Computer Science LNCS 3216, Springer Verlag, pp. 95-102, 2004 Acrobat Reader format [270Kb]
  • Elizabeth Bullitt, Inkyung Jung, Keith Muller, Guido Gerig, Stephen Aylward, Sarang Joshi, Keith Smith, Matthew Ewend, "Determining Malignancy of Brain Tumors By Analysis of Vessel Shape", Lecture Notes in Computer Science LNCS 3217, Springer Verlag, pp. 645-653, 2004 Acrobat Reader format [320Kb]
  • Corouge, Isabelle, Gouttard, Sylvain and Gerig, Guido, "Towards a Shape Model of White Matter Fiber Bundles using Diffusion Tensor MRI" , International Symposium on Biomedical Imaging (ISBI'04), (Piscataway, NJ), pp. 344-347, April 2004 Acrobat Reader format [0.75Mb]
  • Martin Styner and Guido Gerig, "Shape Analysis of Anatomical Structures corrected for Multiple Correlated Statistical Tests", Proc. of SPIE, Medical Imaging 2004: Image Processing, Milan Sonka,J. Michael Fitzpatrick, Eds., Vol. #5370, pp. 233-240, Feb. 2004 Acrobat Reader format [400Kb] Abstract w. full reference

    • 2003 Peer reviewed journal papers

  • Prastawa, Marcel, and Moon, Nathan, and Bullitt, Elizabeth, and van Leemput, Koen and Gerig, Guido, Automatic Brain and Tumor Segmentation, Academic Radiology, Vol. 10 pp. 1341-1348 Dec. 2003 Acrobat Reader format [320Kb]
  • Bullitt, Elizabeth, and Gerig, Guido, and Pizer, Stephen M., and Lin, Weili and Aylward, Stephen R. Automatic Measuring Tortuosity of the Intracerebral Vasculature from MRA Images, IEEE Transactions on Medical Imaging TMI, Vol 22, No 9, Sept. 2003, pp. 1163-1171
  • Stephen M. Pizer, Guido Gerig, Sarang Joshi, Stephen R. Aylward, Multiscale Medial Shape-Based Analysis of Image Objects, Proceedings of the IEEE, Special Isasue on: Emerging Medical Imaging Technology, Vol. 91, No. 10, pp. 1670-1679, October 2003 Acrobat Reader format [730Kb]
  • Guihuao Zhai, Weili Lin, Kathy Wilber, Guido Gerig, and John Gilmore, "Comparison of Regional White Matter Diffusion in Healthy Neonate and Adults Using a 3T Head-only MR Scanner", Radiology:229, 2003, pp. 673-681 Acrobat Reader format [330Kb]
  • M. Styner, G. Gerig, Steve Pizer, Sarang Joshi, "Automatic and Robust Computation of 3D Medial Models Incorporating Object Variability", International Journal of Computer Vision (IJCV), O. Faugeras, K. Ikeuchi, and J. Ponce, eds., Vol. 55, No. 2/3, Nov/Dec 2003, pp. 107-122 Acrobat Reader format [330Kb]
  • M. Styner, G. Gerig, J. Lieberman, D. Jones, D. Weinberger, "Statistical shape analysis of neuroanatomical structures based on medial models". Medical Image Analysis (MEDIA, Elsevier), Vol. 7 No. 3, Sept. 2003, pp. 207-220 Acrobat Reader format [6Mb]
  • S. Joshi, P. Lorenzen, G. Gerig, and E. Bullitt, "Structural and Radiometric Asymmetry in Brain Images", Medical Image Analysis Journal, Volume 7, Issue 2, Pages 155-170, Elsevier Science, June 2003.

    • 2003 Peer reviewed full length conference papers

  • Marcel Prastawa, Elizabeth Bullitt, Sean Ho, Guido Gerig, "Robust Estimation for Brain Tumor Segmentation", Lecture Notes in Computer Science LNCS #2879, pp. 530-537, Nov. 2003 Acrobat Reader format [465Kb]
  • Pierre Fillard, John Gilmore, Weili Lin, Joseph Piven, Guido Gerig, "Quantitative Analysis of White Matter Fiber Properties along Geodesic Paths", Lecture Notes in Computer Science LNCS #2879, pp. 16-23, Nov. 2003 Acrobat Reader format [525Kb]
    • MICCAI'03 Award: Best Student Paper Image Processing and Visualization
  • Guido Gerig, Keith E. Muller, Emily O. Kistner, Yueh-Yun Chi, Miranda Chakos, Martin Styner, Jeffrey A. Lieberman, "Age and treatment related local hippocampal changes in schizophrenia explained by a novel shape analysis method", Lecture Notes in Computer Science LNCS #2879, pp. 653-660, Nov. 2003 Acrobat Reader format [525Kb]
  • Martin Styner, Jeffrey A. Lieberman, and Guido Gerig, "Boundary and Medial Shape Analysis of the Hippocampus in Schizophrenia", Lecture Notes in Computer Science LNCS #2879, pp. 464-471, Nov. 2003 Acrobat Reader format [525Kb]
  • Y. Sampath K. Vetsa, Martin Styner, Stephen M. Pizer, Jeffrey A. Lieberman, Guido Gerig, "Caudate shape discrimination in schizophrenia using template-free nonparametric tests", Lecture Notes in Computer Science LNCS #2879, pp. 671-679, Nov. 2003 Acrobat Reader format [300Kb]
  • Elizabeth Bullitt, Guido Gerig, Stephen Aylward, Sarang Joshi, Keith Smith, Matthew Ewend, and Weili Lin, "Vascular Attributes and Malignant Brain Tumors", Lecture Notes in Computer Science LNCS #2878, pp. 661-669, Nov. 2003 Acrobat Reader format [216Kb]
  • Pierre Fillard and Guido Gerig, "Analysis Tool For Diffusion Tensor MRI", SHORT PAPER, Lecture Notes in Computer Science LNCS #2879, pp. 967-968, Nov. 2003 Acrobat Reader format [653Kb]
  • Guido Gerig, Marcel Prastawa, Weili Lin and John Gilmore, "Assessing Early Brain Development in Neonates by Segmentation of High-Resolution 3T MRI", SHORT PAPER, Lecture Notes in Computer Science LNCS #2879, pp. 979-980, Nov. 2003 Acrobat Reader format [410Kb]
  • Sean Ho and Guido Gerig, "Scale-Space on Image Profiles About an Object Boundary", in Scale Space, Lecture Notes in Computer Science LNCS-2695, pp. 564-575, Springer, July 2003 Acrobat Reader format [785Kb]

    • 2002 Peer reviewed journal papers

  • Pizer, Stephen M. and Fletcher, Thomas and Thall, Andrew and Styner, Martin and Gerig, Guido and Joshi, Sarang, Object Models in Multiscale Intrinsic Coordinates via M-reps, image and vision computing "ivc", Vol. 21, Nr. 1, pp. 5-15, Jan. 2002 Acrobat Reader format [600Kb]
  • M.E. Shenton, G. Gerig, R.W. McCarley, G. Szekely, R. Kikinis. "Amygdala-Hippocampus Shape Differences in Schizophrenia: The application of 3D shape models to volumetric MR data", Psychiatry Research Neuroimaging, 2002, 115:15-35 Acrobat Reader format [1.6Mb]
    • Selected for: 2004 IMIA Yearbook of Medical Informatics, Schattauer Publishing Company, Stuttgart, Germany

    2002 Peer reviewed full length conference papers

  • Guido Gerig and Martin Styner, Statistical Shape Models for Segmentation and Structural Analysis, invited paper by IEEE International Symposium on Biomedical Imaging (ISBI 2002), Macro to Nano, July 2002 Acrobat Reader format [480Kb]
  • Moon, Nathan, and Bullitt, Elizabeth, and van Leemput, Koen and Gerig, Guido, Automatic Brain and Tumor Segmentation, Proc. Medical Image Computing and Computer-Assisted Intervention MICCAI 2002, T. Dohi and R. Kikinis (Eds.), Lecture Notes in Computer Science 2488, September 2002 Acrobat Reader format [540Kb]
  • Pizer, Stephen M. and Fletcher, Thomas and Thall, Andrew and Styner, Martin and Gerig, Guido and Joshi, Sarang, Object Models in Multiscale Intrinsic Coordinates via M-reps, accepted GMBV 2002 (Workshop: Generative Model-Based Vision, ECCV2002) Acrobat Reader format [600Kb]
  • Sean Ho, Elizabeth Bullitt, and Guido Gerig , Level Set Evolution with Region Competition: Automatic 3-D Segmentation of Brain Tumors, Proc. 16th Int Conf on Pattern Recognition ICPR 2002, IEEE Computer Society, editors: R. Kasturi, D. Laurendeau, C. Suen, Aug 2002, pp. 532-535 Acrobat Reader format [750Kb]
  • Nathan Moon, Elizabeth Bullitt, Koen van Leemput, and Guido Gerig, Model-Based Brain and Tumor Segmentation, Proc. 16th Int Conf on Pattern Recognition ICPR 2002, editors: R. Kasturi, D. Laurendeau, C. Suen, IEEE Computer Society, Aug.2002, pp. 528-531 Acrobat Reader format [410Kb]
  • M. Styner, C. Charles, J. Park, G. Gerig, Multisite validation of image analysis methods - Assessing intra and inter site variability, Proc. SPIE Vol. 4684, p.278-286, Medical Imaging 2002: Image Processing, Milan Sonka,J. Michael Fitzpatrick, Eds., Feb. 2002 Acrobat Reader format [0.5Mb] Abstract w. full reference

    • 2001 Peer reviewed journal papers

  • J.H. Gilmore, G. Gerig, B. Specter, C. Charles, J. Wilber, B. Herzberg, M.A. Kliewer, Neonatal Cerebral Ventricle Volume: A Comparison of 3D Ultrasound and Magnetic Resonance Imaging, Ultrasound in Med.& Biol.,27(8), pp. 1143-1146, 2001 Acrobat Reader format [98Kb]
  • E. Bullitt, S. Aylward, E. Bernard, and G. Gerig, Computer assisted Visualization of Arteriovenous Malformations on the Home Personal Computer, Neurosurgery, Vol. 48, No. 3, March 2001

    • 2001 Peer reviewed full length conference papers

  • G. Gerig, M. Styner, D. Jones, D. Weinberger, and J. Lieberman, Shape Analysis of brain ventricles using SPHARM, in Proc. Workshop on Mathematical Methods in Biomedical Image Analysis, Proc. MMBIA 2001, IEEE Computer Society, pp. 171-178, Dec. 2001 Acrobat Reader format [1Mb]
  • M. Styner and G. Gerig, Three-dimensional medial shape representation incorporating object variability, in Proc. Computer Vision and Pattern Recognition CVPR 2001, IEEE Computer Society, pp. 651-656, Dec. 2001 Acrobat Reader format [2.6Mb]
  • G Gerig, M Styner, ME Shenton, JA Lieberman, Shape versus Size: Improved Understanding of the Morphology of Brain Structures, Proc. MICCAI 2001, Lecture Notes in Computer Science 2208, pp. 24-32, Oct. 2001 Acrobat Reader format [475Kb]
  • G Gerig, M Jomier and M Chakos, VALMET: A new validation tool for assessing and improving 3D object segmentation, Proc. MICCAI 2001, Lecture Notes in Computer Science 2208, pp. 516-523, Oct. 2001 Acrobat Reader format [170Kb]
  • M. Styner and G. Gerig, Medial models incorporating object variability for 3D shape analysis, Proc. IPMI 2001, LLNCS 2082, Springer, pp. 502-516, June 2001 Acrobat at Springer  Acrobat Reader format [6.9Mb]
  • D. Welti, G. Gerig, E-W. Radue, L. Kappos, and G. Szekely, Spatio-temporal Segmentation of Active Multiple Scleroris Lesions in Serial MRI Data, Proc. IPMI 2001, LLNCS 2082, Springer, pp. 438-445, June 2001 Acrobat at Springer  Acrobat Reader format [6.9Mb]

    • 2000 and earlier

    Peer reviewed journal papers

  • M. Styner, G. Gerig, Christian Brechbuehler and Gabor Szekely, Parametric estimate of intensity inhomogeneities applied to MRI, IEEE TMI 19(3), pp. 153-165, 2000 Acrobat Reader format [1.45Kb]
  • Gerig, Guido and Welti, Daniel and Guttmann, Charles and Colchester, Alan and Szekely, Gábor, Exploring the discrimination power of the time domain for segmentation and characterization of lesions in serial MR data}, Medical Image Analysis (MEDIA), Elsevier, Vol. 4, No. 1, March 2000, pp. 31-42 Acrobat Reader format [900Kb]
  • A. Kelemen, G. Szekely, and G. Gerig, Elastic Model-Based Segmentation of 3-D Neuroradiological Data Sets, IEEE-TMI, Oct. 1999, 18(10):828-839 Acrobat Reader format [1.3Kb] Original TMI Acrobat format [0.62Kb]
  • G. Szekely, A. Kelemen, Ch. Brechbuehler and G. Gerig, Segmentation of 3D objects from MRI volume data using constrained elastic deformations of flexible Fourier surface models, Medical Image Analysis (MEDIA), Vol. 1, No. 1, March 1996, pp. 19-34 gzipped PS-file [4.4Mb] / Acrobat Reader format [3.1Mb]
  • Ch. Brechbühler, G. Gerig and O. Kübler, Parametrization of closed surfaces for 3-D shape description, Computer Vision Image Understanding CVIU, Vol. 61, pp. 154-170, March 1995 Acrobat Reader format [5.1Mb] / Acrobat Reader format, 2pages per sheet [5.2Mb]

    • Peer reviewed full length conference papers

  • M. Styner and G. Gerig, Hybrid boundary-medial shape description for biologically variable shapes, Proc. of IEEE workshop MMBIA 2000, IEEE, pp. 235-242, June 2000 Acrobat Reader format [2.5Mb]
  • M. Styner and G. Gerig, Brain morphometry by distance measurement in non-Euclidean, curvilinear space, Proc. of IPMI 1999, Springer, LLNCS 1613, pp. 235-242, June 1999 Acrobat Reader format [985Kb]
  • Martin Berger and Guido Gerig, Motion measurements in low contrast X-ray imagery, Lecture Notes in Computer Science 1496, Proc. of MICCAI'98, editors: William M. Wells, Alan Colchester, Scott Delp, 832-841, Oct. 1998 Acrobat Reader format [640Kb]
  • Gerig, Guido and Welti, Daniel and Guttmann, Charles and Colchester, Alan and Szekely, Gabor, Exploring the discrimination power of the time domain for segmentation and characterization of lesions in serial MR data}, Lecture Notes in Computer Science 1496, Proc. of MICCAI'98, editors: William M. Wells, Alan Colchester, Scott Delp, 469-480, Oct. 1998 Acrobat Reader format [1Mb]
  • Dimitrios Ekatodramis, Gabor Szekely and Guido Gerig, Detecting and Infering Brain Activation from functional MRI by Hypothesis-Testing based on the Likelihood Ratio, Lecture Notes in Computer Science 1496, Proc. of MICCAI'98, editors: William M. Wells, Alan Colchester, Scott Delp, 578-589, Oct. 1998 Acrobat Reader format [385Kb]

    • Books and Book Chapters

  • James S. Duncan and Guido Gerig, "Medical Image Computing and Computer-Assisted Intervention -- MICCAI 2005", Lecture Notes in Computer Science LNCS, Springer Verlag, Vol. LNCS 3749 and 3750
  • Lin, Weili, An, Hongy, Chen, Yasheng, Nicholas, Peter, Zhai, GuiHua, Gerig, Guido, Gilmore, John, and Bullitt, Elizabeth, "Practical Consideration for 3T imaging" , Magn Reson Imaging Clin N Am (W.B. Saunders Company, Elsevier), 11(2003), 615-639 (Book Chapter)
  • Gerig, Guido and Welti, Daniel and Guttmann, Charles and Colchester, Alan and Szekely, Gabor, Exploring the discrimination power of the time domain for segmentation and characterization of lesions in serial MR data, TO BE UPDATED, 2002
  • Guido Gerig, Gabor Szekely, Cyril Burger, Digital Image Processing for functional analysis, in Functional Imaging - Principles and Methods, edited by von Schulthess, Gustav Konrand and Hennig, Jurgen, Lippincott-Raven Publishers, 1998, pp. 115-156
  • Gabor Szekely, Thomas Koller, Ron Kikinis, and Guido Gerig, Structural description and combined 3-D display for superior analysis of cerebral vascularity from MRA, in Medical Imaging, L. Beolchi and M.H. Kuhn, editors, Studies in Health Technology and Informatics, Vol. 19, IOS Press, 1995, pp. 183-194
  • Ross Whitaker and Guido Gerig, Vector-valued diffusion, pp. 93-134, in: Geometry-Driven Diffusion in Computer Vision, edited by Bart M. ter Haar Romeny, Kluwer Academic Publishers, Series on Computational Imaging and Vision, Volume 1, October 1994

    • Technical Reports

  • Statistical analysis of diffusion tensor image data based on first principles Matthew Gribbin, Meagan Clement, Keith Muller, Michele Poe, Carissa Cascio, Matthew Jomier, Joseph Piven, and Guido Gerig, March 2006
  • Statistics of Pose and Shape in Multi-Object Complexes using Principal Geodesic Analysis Martin Styner, Kevin Gorczowski, Tom Fletcher, Ja Yeon Jeong, Stephen M. Pizer, Guido Gerig, March 2006
  • Sean Ho and Guido Gerig, Profile Scale Spaces for Statistical Image Match, UNC Technical Report, Jan. 2004
  • Pierre Fillard, John Gilmore, Weili Lin, Joseph Piven, Guido Gerig, "Quantitative Analysis of White Matter Fiber Properties along Geodesic Paths", UNC Technical Report, Jan. 2004
  • Sean Ho, Heather Cody, Guido Gerig, "SNAP: A Software Package for User-Guided Geodesic Snake Segmentation", Technical Report, April 2003 Acrobat Reader format [1.5Mb]
  • Sean Ho and Guido Gerig, "Profile Scale-Space for Image Segmentation", Technical Report UNC CS, March 2003
  • Ho, Sean and Kim, Yongjik and Bullitt, Elizabeth and Gerig, Guido, Medical image segmentation by 3-D level set evolution, Technical Report UNC Chapel Hill, March 1, 2002 Acrobat Reader format [840Kb]

    • Abstracts (back to 2001)

  • Rebecca C. Knickmeyer, Y. Sampath K. Vetsa, Weili Lin, Dianne Evans, Kathy Wilber, Keith J. Smith, Guido Gerig, John H. Gilmore A Structural MRI Study of Human Brain Development from Birth to Age 2, accepted abstract /oral presentation SOBP 2007 (Society of Biological Psychiatry)
  • John H. Gilmore, Isabelle Corouge, Weili Lin, Guido Gerig Early Development of White Matter Tracts in the Normal Neonate Assessed with High resolution DTI and Quantitative Tractography, accepted abstract ICOS 2007
  • A. Belger, G. Gerig, J. Blocher, H. Gu, D. O. Perkins, J. H. Gilmore Altered Brain Growth And Structure In Children And Adolescents At Genetic Risk For Schizophrenia, accepted oral presentation/abstract ICOS 2007 (Int. Conf. of Schizophrenia Research)
  • Gilmore John, Vesta Yethiraja, Lin Weili, Gerig Guido, Neonatal DTI, 61th Annual Convention: Society of Biological Psychiatry, May 2006
  • Gilmore John, Looney Christopher, Vesta Yethiraja, Smith J. Keith, Lin Weili, Lieberman Jeffery, Gerig Guido, Early Postnatal Brain Structure and Development in Humans: Sexual Dimorphism and Cerebral Asymmetry are Present at Birth, American Congress of Pharmacology ACNP, Dec. 2005
  • Gerig Guido, Gilmore John H, Jomier Matthieu, Joshi Sarang, Piven Joseph, Computational anatomy to assess growth pattern of early brain development in healthy and disease populations, American Congress of Pharmacology ACNP, Dec. 2005
  • Hazlett, H.C., Poe, M., Smith, R.G., Gerig, G., and Piven, J., UPDATE ON A LONGITUDINAL MRI STUDY OF YOUNG CHILDREN WITH AUTISM, Int. Meeting for Autism Research IMFAR, 2005
  • Guido Gerig , Isabelle Corouge, Clement Vachet, Ranga Krishnan and James MacFall, Quantitative Analysis of Diffusion Properties of White Matter Fiber Tracts: A Validation Study, International Society of Magnetic Resonance ISMRM, May 2005 (peer reviewed long abstract)
  • Guido Gerig, Weili Lin, Sampath Vetsa, John Gilmore, Assessing White Matter Growth Trajectory of Early Neonatal Development by 3T MR-DTI, , International Society of Magnetic Resonance ISMRM, May 2005 (peer reviewed long abstract)
  • G. Gerig and John H. Gilmore, Early Brain Development Assessed by new Quantitative Analysis of structural MRI and DTI, Society of Biological Psychiatry SOBP, Invited Symposium, May 2005
  • G. Gerig, S Joshi, H Gu, D Perkins, RG Steen, R Hamer, JA Lieberman, Automatic pipeline for quantitative brain tissue segmentation and parcellation: Experience with a large longitudinal schizophrenia MRI study, Int. Cong. of Schizophrenia ICOS, March 2005
  • M. El-Sayed, L. Sikich, C. Charles, G. Gerig, M. Styner, S. Joshi, J. Lieberman, Morphometric MRI study in childhood and adolescent psychoses, , 51st Annual Meeting of the AACAP (American Acedemy of Child & Adult Psychiatry), Washington, 2004.
  • G. Gerig and John Gilmore, Neonatal Brain Development Assessed by new Quantitative Analysis of High-field 3Tesla MRI and DTI, American College of Neuropharmacology ACNP, Invited Symposium, Dec. 2004
  • ME Shenton, G Gerig, JS Kwon, C Deutsch, M Kubicki, RW McCarley "Midline-Bacum Septi Pellucidi Abnormalities, Hippocampal Shape Abnormalities, and Diffusion Tensor Corpus Callosum Asymmetry Abnormalities in Schizophrenia", Collegium Internationale Neuro-Psychopharmacologicum XXIVth CINP, June 23 2004
  • Guido Gerig, Pierre Fillard, Marcellinus Prastawa, Weili Lin, John H. Gilmore, "Neonatal Brain Development Assessed by new Quantitative Analysis of High-field 3Tesla MRI and DTI", Society of Biological Psychiatry SOBP, April 29 - May 1, 2004
  • Mohamed Elsayed, Linmarie Sikich, Cecil Charles, Sarang Joshi, Guido Gerig, Jeffrey A. Lieberman, "Volumetric MRI Study in Childhood and Adolescent Psychosis" , Society of Biological Psychiatry SOBP, April 29 - May 1, 2004
  • Guido Gerig, Pierre Fillard, Marcel Prastawa, Weili Lin and John Gilmore, "New quantitative analysis of high-field 3T MRI/DTI to assess neonatal brain development", ACNP 2003, December 2003, Abstract
  • M Styner, G. Gerig, E Kistner, K Muller, JA Lieberman, "Age and treatment related local hippocampal changes in schizophrenia explained by a novel shape analysis method", Schizophrenia Research, Vol. 60, No. 1, Elsevier, March 15, 2003, p. 208, Abstract
  • G Gerig, M Styner, DW Jones, DR Weinberger, JA Lieberman, "Ventricular shape of monozygotic twins discordant for schizophrenia reflects vulnerability", Schizophrenia Research, Vol. 60, No. 1, Elsevier, March 15, 2003, p. 194, Abstract
  • JH Gilmore, G Zhai, W Lin, K Wilber, G Gerig, "White Matter Development in Newborns Assessed with Diffusion Tensor Imaging", Schizophrenia Research, Vol. 60, No. 1, Elsevier, March 15, 2003, p. 195, Abstract
  • G Gerig, M Styner, M Chakos, JA Lieberman, Hippocampal Shape Alterations in Schizophrenia: Results of a new Methodology, 11th Biennial Winter Workshop on Schizophrenia, Feb. 26, 2002, Abstract.
  • M Styner, G Gerig, DW Jones, DR Weinberger, JA Lieberman, Lateralized Differences in ventricular Shape in monozygotic Twins discordant for Schizophrenia, 11th Biennial Winter Workshop on Schizophrenia, Feb. 26, 2002, Abstract.
  • M. Styner, D.W. Jones, D Weinberger, JA Lieberman, G Gerig, "Shape analysis of ventricular structures in mono- and dizygotic twin study", Schizophrenia Research, Vol. 49, Nos. 1-2, Elsevier, April 28, 2001, p. 167, Abstract
  • J Park, G Gerig, M Chakos, *D Vandermeulen, JA Lieberman, "Neuroimaging of Psychiatry Disease: Reliabl e and efficient automatic brain tissue segmentation for increased sensitivity", Schizophrenia Research, Vol. 49, Nos. 1-2, Elsevier, April 28, 2001, p. 163, Abstract
  • S. Schobel, Miranda Chakos, Guido Gerig, Henry Bridges, Hongbin Gu, Cecil Charles, Jeffrey Lieberman, "Duration and Severity of Illness and Hippocampal Volume in Schizophrenia as Assessed by 3-D Manual Segmentation", Schizophrenia Research, Vol. 49, Nos. 1-2, Elsevier, April 28, 2001, p. 165, Abstract
  • H Bridges, M Chakos, G Gerig, S Schobel, C Charles, H Gu, J Lieberman, "Association of Duration and Se verity of Illness and Superior Temporal Gyrus Volume as Assessed by 3-D Manual Segmentation Measurements in Male Schizophrenic Patients", Schizophrenia Research, Vol. 49, Nos. 1-2, Elsevier, April 28, 2001, p. 151, Abstract
  • G Gerig, M Jomier, M Chakos, JA Lieberman, "Segmentation of hippocampal shape: Improved reliability by 2D and 3D visualization of segmented objects and of intra-/inter-rater variability", Schizophrenia Research, Vol. 49, Nos. 1-2, Elsevier, April 28, 2001, p. 154, Abstract
  • M Chakos, S Schobel, G Gerig, Cecil Charles, HB Gu, D Bradford, J Lieberman, "Clinical correlates of Structural Brain Abnormalities in Male Schizophrenic Patients", Schizophrenia Research, Vol. 49, Nos. 1-2, Elsevier, April 28, 2001, p. 152, Abstract
  • J.H. Gilmore, G. Gerig, B. Specter, C. Charles, J.S. Wilbur, B.S. Hertzberg, M.A. Kliever, "Neonatal Cerebral Ventricle volume: A comparison of 3D ultrasound and MRI", Schizophrenia Research, Vol. 49, Nos. 1-2, Elsevier, April 28, 2001, p. 152, Abstract