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In Chronological Order • By Subject
2006
- J.
Huan, D. Bandyopadhyay, J. Snoeyink, J. Prins, A. Tropsha, W. Wang, "Distance-based Identification of Spatial
Motifs in Proteins Using Constrained Frequent Subgraph Mining",
to appear in Proceeding of the IEEE
Computational Systems Bioinformatics (CSB), 2006
- Jun
Huan,
Wei Wang, and Jan Prins, "Protein
Local
Structure Comparison: Methods and Future
Directions", to appear in Advances in
Computers by Chau-Wen Tseng (eds.), Elsevier, 2006.
- Jun
Huan, Wei
Wang, and Jan Prins, "Graph
Mining and
Protein Local Structure Comparison", to appear in Knowledge
Discovery in Bioinformatics: Techniques, Methods, and
Applications by Y. Pan and T. Hu (eds.), John Wiley and Sons, 2006.
- Deepak Bandyopadhyay, Jun Huan, Jinze Liu,
Jan
Prins, Jack Snoeyink, Wei Wang, Alexander Tropsha, "Structure-based Function Inference Using
Protein Family-specific Fingerprints ", Journal of Protein Science, Vol. 15, Page: 1537–1543. PubMed
link
2005
- Jun Huan, Deepak Bandyopadhyay, Wei Wang, Jack Snoeyink,
Jan Prins, and Alexander Tropsha. "Comparing
Graph Representations of Protein Structure for Mining Family-Specific
Residue-Based Packing Motifs", Journal of
Computational Biology(JCB), Vol. 12, No. 6: 657-671, 2005. PDF
- Jun Huan, Deepak Bandyopadhyay, Jinze Liu, Jan Prins, Jack
Snoeyink, Alexander Tropsha, and Wei Wang. "Rapid
Determination of Local Structural Features Common to a Set of Proteins
", Intelligent
Systems for Molecular Biology (ISMB) (demo), 2005. PDF
2004
- Jun Huan, Wei Wang, Jan Prins, and Jiong Yang. "SPIN:
Mining Maximal Frequent Subgraphs from Graph Databases", in Proceedings
of the 10th ACM SIGKDD International
Conference on Knowledge Discovery and Data Mining, pp. 581-586,
2004. PDF, Tech Report
- Jun Huan, Wei Wang, Deepak Bandyopadhyay, Jack Snoeyink,
Jan Prins, and Alexander Tropsha. "Mining Family Specific
Residue
Packing Patterns from Protein Structure Graphs ", in Proceedings
of the 8th Annual International Conference on Research in Computational
Molecular Biology (RECOMB), pp. 308-315, 2004. PDF, Presentation
- Jun Huan, Wei Wang, Angliana Washington, Jan Prins, Ruchir
Shah, and Alexander Tropsha. "Accurate Classification of
Protein
Structural Families using Coherent Subgraph Analysis", in Proceedings
of the Pacific Symposium on Biocomputing (PSB), pp. 411-422, 2004.
PDF
2003
- Jun Huan, Wei Wang, and Jan Prins. "Efficient
Mining of Frequent Subgraph in the Presence of Isomorphism",
in Proceedings of the 3rd IEEE International Conference on Data
Mining (ICDM), pp. 549-552, 2003. PDF,
Tech Report Presentation
- Jun Huan, Jan Prins, Wei Wang, and Todd Vision. "Reconstructing
of Ancestral Gene Order After Segmental Duplication and Gene Loss",
in Proceedings of the IEEE Computer Society Bioinformatics
Conference (CSB), pp. 484-485, 2003. PDF
- K. Berlin, J. Huan, M. Jacob, G. Kochhar, J. Prins, W.
Pugh, P. Sadayappan, J. Spacco, C.-W. Tseng, "Evaluating the
Impact of Programming Language Features on the Performance of Parallel
Applications on Cluster Architectures", in Languages and
Compilers for Parallel Computing (LCPC), 2003 PDF
- Jan Prins, Jun Huan, Bill Pugh, Chau-Wen Tseng, and P
Sadayappan. "UPC Implementation of an Unbalanced Tree Search
Benchmark", in Technical Reports produced by the
Department of Computer Science at the University of North Carolina,
Chapel Hill, 2003. PDF
2001 & Before
- Jingmei Liu, Yuan Yuan, Jun Huan & Zhiyuan Shen. "Inhibition
of Breast and Brain Cancer Cell Growth by BCCIP, an Evolutionarily
Conserved Nuclear Protein that Interacts with BRCA2", in Oncogene,
Volume 20, Number 3. pp. 336-345, January 2001. PDF
- Mark G. D'Souza, Jun Huan, Samantha Sutton, Margie Romine,
and Natalia Maltsev, "PUMA2 -- An
Environment for Comparative Analysis of Metabolic Subsystems and
Automated ReconstruMction of Metabolism of Microbial Consortia and
Individual Organisms from Sequence Data" Technical Memorandum ANL/MCS-TM-240,
December 1999. Link
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