Publications

Papers:

  • Xueyi Wang and Jack Snoeyink. (2007) Defining and computing optimum RMSD for gapped multiple structure alignment, The Workshop on Algorithms in Bioinformatics 2007 (WABI).
  • Ian W. Davis, Andrew Leaver-Fay, Vincent B. Chen, Jeremy N. Block, Gary J. Kapral, Xueyi Wang, Laura W. Murray, W. Bryan Arendall, III, Jack Snoeyink, Jane S. Richardson and David C. Richardson. (2007) MolProbity: all-atom contacts and structure validation for proteins and nucleic acids, Nucleic Acids Research
  • Xueyi Wang, Jun Huan, Jack Snoeyink, and Wei Wang. (2007) Mining RNA Tertiary Motifs with Structural Graphs, 19th International Conference on Scientific and Statistical Database Management (SSDBM).
  • Andrew Leaver-Fay, Yaunxin Liu, Jack Snoeyink, and Xueyi Wang. (2007) Faster placement of hydrogens in protein structures by dynamic programming, Journal of Experimental Algorithmics, (pdf)
  • Xueyi Wang, Gary Kapral, Laura Murray, David Richardson, Jane Richardson, and Jack Snoeyink. (2007) RNABC: forward kinematics to reduce all-atom steric clashes in RNA backbone, Journal of Mathematical Biology, (pdf)
  • Xueyi Wang and Jack Snoeyink. (2006) Multiple Structure Alignment by Optimal RMSD Implies that the Average Structure is a Consensus, Proceedings on 2006 LSS Computational Systems Bioinformatics Conference (CSB), pp: 79-87. (pdf)

Presentations:

  • Geometric Methods for Improving RNA Structure, the Second SIAM Conference on Mathematics for Industry, Detroit, Oct. 2005. (ppt)
  • Forward and inverse kinematics in RNA backbone conformations, Biogeometry PI Meeting, Hawaii, Jan. 2005. (ppt)
  • Placing hydrogens by dynamic programming, Biogeometry PI Meeting, in Conjunction with SoCG, Brooklyn Polytechnic University, New York, Jun. 2004. (ppt)

Poster:

  • The 3D structure of RNA backbone, Pacific Symposium on Biocomputing, Hawaii, Jan. 2005. (ppt)

Papers before 2003:

  • Xueyi Wang, Jiajun Bu, and Chun Chen. (2002) Achieving undo in bitmap-based collaborative graphics editing systems, Proceedings on the ACM 2002 Conference on Computer Supported Cooperative Work (CSCW), pp: 68-76. (pdf)
  • Xueyi Wang, Jiajun Bu, and Chun Chen. (2002) A new consistency model in collaborative editing systems, Proceedings on the Fourth International Workshop on Collaborative Editing. (pdf)
  • Xueyi Wang, Jiajun Bu, and Chun Chen. (2002) Semantic Preservation in Real-time Collaborative Graphics Designing Systems, Proceedings on the Fourth International Workshop on Collaborative Editing. (pdf)
  • Xueyi Wang, Jiajun Bu, and Chun Chen. (2002) A New Consistency Preservation Schema on Bitmap-based Collaborative Graphics Designing Systems, Proceedings on the 5th Asia-Pacific Conference on Computer-Human Interaction, pp: 418-430.
  • Xueyi Wang, Jiajun Bu, and Chun Chen. (2002) Research on Reliable Communication in Real-Time Collaborative Designing Systems, Distributed Communities on the Web, 4th International Workshop (DCW), Lecture Notes In Computer Science, Vol. 2468, pp: 42-53. (pdf)