Conference Deadlines

  • Jan 28: ISMB
  • May 20: ACM-BCB
  • Aug 01: IEEE BIBM
  • Nov 01: RECOMB

Conference Paper

  • Frontier: Finding the Boundaries of Novel Transposable Element Insertions in Genomes.
    Anwica Kashfeen, Leonard McMillan. Proceedings of the 2021 ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics. ACM, 2019. [pdf]
  • ELITE: Efficiently Locating Insertions of Transposable Elements.
    Anwica Kashfeen, Harper Fauni, Timothy Bell, Fernando Pardo-Manuel de Villena, Leonard McMillan. Proceedings of the 2019 ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics. ACM, 2019. [pdf]

Journal

  • Content and performance of the minimuga genotyping array: a new tool to improve rigor and reproducibility in mouse research..
    Sigmon, John Sebastian, Matthew W. Blanchard, Ralph S. Baric, Timothy A. Bell, Jennifer Brennan, Gudrun A. Brockmann, A. Wesley Burks, Mauro Calabrese, Kathleen Caron, Richard Cheney, Dominic Ciavatta, Frank Conlon, David Darr, James Faber, Craig Franklin, Timothy R Gershon, Lisa Gralinski, Bin Gu, Christiann H Gaines, Robert S Hagan, Ernest G. Heimsath, Mark T. Heise, Pablo Hock, Folami Ideraabdullah, J Charles Jennette, Tal Kafri, Anwica Kashfeen, et al. Genetics June 2020. [pdf]
  • Whole Genome Sequencing and Progress Toward Full Inbreeding of the Mouse Collaborative Cross Population.
    John R. Shorter, Maya L. Najarian, Timothy A. Bell, Matthew Blanchard, Martin T. Ferris, Pablo Hock, Anwica Kashfeen, Kathryn E. Kirchoff, Colton L. Linnertz, J. Sebastian Sigmon, Darla R. Miller, Leonard McMillan, and Fernando Pardo-Manuel de Villena. Genetics June 2019. [pdf]
  • Genomes of the Mouse Collaborative Cross.
    Anuj Srivastava, Andrew P. Morgan, Maya L. Najarian, Vishal Kumar Sarsani, J. Sebastian Sigmon, John R. Shorter, Anwica Kashfeen, Rachel C. McMullan, Lucy H. Williams, Paola Giusti-Rodríguez, Martin T. Ferris, Patrick Sullivan, Pablo Hock, Darla R. Miller, Timothy A. Bell, Leonard McMillan, Gary A. Churchill, Fernando Pardo-Manuel de Villena. Genetics June 2017 206: 537-556. [pdf]

Abstract

  • Insights on the Origin, Fate, and Functional Consequences of de novo ERV Mutations in the Collaborative Cross.
    Anwica Kashfeen, Paul A Cotney, James Xenakis, Fernando Pardo Manuel de Villena, Leonard McMillan. IMGC 2022 [pdf]
  • Identification and Characterization of Transposable Elements in Genetic Reference Populations.
    Anwica Kashfeen, Fernando Pardo Manuel de Villena, Leonard McMillan. IMGC 2018 [pdf]
  • Origin and Fate of de novo Insertions of Transposable Elements in the Collaborative Cross.
    Timothy A Bell, Anwica Kashfeen, Pablo Hock, Darla Miller, Leonard McMillan and Fernando Pardo-Manuel de Villena. IMGC 2018 [pdf]
  • Background-dependent mutation rate and strong deleterious effects of de novo transposition of endogenous retrovirus in mouse inbred strains.
    Fernando Pardo-Manuel de Villena, Anwica Kashfeen, Timothy A Bell, Darla Miller, Gary A Churchill, Martin T Ferris, Leonard McMillan. IMGC 2018 [pdf]